Sunday, February 21, 2021

Project BIOMEDE

Since january 2021, I am mainly involved in the BIOMEDE project.

This project aims at better characterizing, by using machine learning or deep learning methods, the tumors of patients with diffuse intrinsic pontine gliomas (DIPG) which is a rare pediatric cancer with a very poor prognosis. The analysis is based on clinical and imaging (multi-parametric MRI) features. 

https://www.lito-web.fr/en/projects/94-biomede-ia-2



Preprint ArXiv

Our preprint is now available on ArXiv

https://arxiv.org/abs/2102.08939

A Mutual Reference Shape for Segmentation Fusion and Evaluation

Abstract : This paper proposes the estimation of a mutual shape from a set of different segmentation results using both active contours and information theory. The mutual shape is here defined as a consensus shape estimated from a set of different segmentations of the same object. In an original manner, such a shape is defined as the minimum of a criterion that benefits from both the mutual information and the joint entropy of the input segmentations. This energy criterion is justified using similarities between information theory quantities and area measures, and presented in a continuous variational framework. In order to solve this shape optimization problem, shape derivatives are computed for each term of the criterion and interpreted as an evolution equation of an active contour. A mutual shape is then estimated together with the sensitivity and specificity of each segmentation. Some synthetic examples allow us to cast the light on the difference between the mutual shape and an average shape. The applicability of our framework has also been tested for segmentation evaluation and fusion of different types of real images (natural color images, old manuscripts, medical images).      


Scientific talk, FIL (Fédération Informatique de Lyon) January 2023

I presented my research activities on 19 January 2023 to the members of the FIL federation. https://fil.cnrs.fr/event/fil-seminar-january-1...